double-arrowCurrent Projects

Drawings of different butterfly patterns

Heliconius wing patterns

Team: Tanya Berger-Wolf, Harry Chao, Anuj Karpatne, Daniel Rubenstein, Yu Su, Reshma Ramesh Babu, Jihyung Kil, Christopher Lawrence, Luke Song, Yael Stochel

Seven zebras in Botswana grasslands

Patterns2Genes

Team: Tanya Berger-Wolf, Tessa Cotron, Daniel Rubenstein, Scott Wolf

Black-blotch porcupine fish

Fishes

Team: Henry L. Bart Jr., Anuj Karpatne, Paula Mabee, Meghan Balk, Kelly Diamond, Mohannad Elhamod, M. Maruf

Simple graphic representing the tree of life

Macroevolution

Team: Josef Uyeda, Nicholas Bone, Bailey Howell, Diego Porto

Bat skulls

3D Morphometrics

Team: A. Murat Maga, Sara Rolfe, Chi Zhang

Our approach 

Knowledge from biological ontologies,

leveraging the structure they impose,

together with multiple imaging formats and other data

to fuel the development of next generation of Knowledge-Guided Machine Learning models that are more interpretable, transferable, robust, and label- and sample-efficient,

expanding the role of ML in addressing the most challenging biology problems, forming a virtuous cycle.

 

Imageomics use cases
Mohannad Elhamod, Kelly Diamond, A. Murat Maga, Yasin Bakis, Henry L. Bart Jr., Paula Mabee, Wasila Dahdul, Jeremy Leipzig, Jane Greenberg, Brian Avants and Anuj Karpatne, "Hierarchy-guided Neural Networks for Species Classification"